Veröffentlichungen 1996

Abteilung Biogeochemie

Direktor: Prof. Dr. Bo Barker Jørgensen

Arnosti, C.: A new method for measuring polysaccharide hydrolysis in marine environments. Org. Geochem. 25, 105-115 (1996)

Boudreau, B.P.: Diagenetic models and their implementation. Springer-Verlag, Heidelberg, 1997.

Canfield, D.E.: Evolution of the sulfur cycle. In: Fourth international symposium on the geochemistry of the Earth surface, Ed. S.H. Bottrell. International Association of Geochemistry and Cosmochemistry, 1966, 23-27.

Canfield, D.E. and A. Teske.: Late Proterozoic rise in atmospheric oxygen from phylogenetic and stable isotopic studies. Nature 382, 127-132 (1996).

Canfield, D.E., and B. Thamdrup: Fate of elemental sulfur in an intertidal sediment. FEMS Microbiol. Ecol. 19, 95-103 (1996).

Canfield, D.E., T.W. Lyons and R. Raiswell: A model for iron deposition to euxinic Black Sea sediments. Am. J. Sci. 296, 818-834 (1996).

Ferdelman, T.G., C. Lee, S. Pantoja, J. Harder, B.M. Bebout, and H. Fossing: Sulfate reduction and methanogenesis in a Thioploca-dominated sediment off the coast of

Chile. Geochim. Cosmochim. Acta, in press (1996).

Forster, S.: Spatial and temporal distribution of oxidation events occuring below the sediment water interface. Marine Ecol. 17, 309-319 (1996).

Forster, S., M. Huettel and W. Ziebis: 1996. Impact of boundary layer flow velocity on oxygen utilization in coastal sediments. Mar. Ecol. Prog. Ser. 143, 173-185 (1996).

Gust, G., W. Bowles, S. Giordano and M. Huettel: Particle accumulation in a cylindrical sediment trap under laminar and turbulent steady flow. Aquatic Sciences, in press (1997).

Habicht, K.S. and D.E. Canfield: Sulphur isotopic fractionation in modern microbial mats and the evolution of the sulphur cycle. Nature 382, 342-343 (1996).

Habicht, K.S. and D.E. Canfield: Sulfur fractionation by natural populations of sulfate-reducing bacteria. In: Fourth international symposium on the geochemistry of the Earth surface, Ed. S.H. Bottrell. International Association of Geochemistry and Cosmochemistry, 1966, 59-63.

Huettel, M., S. Forster, S. Klöser and H. Fossing: Overcoming diffusive limitations: Vertical migration in the sediment-dwelling sulfur bacteria Thioploca spp. Appl. Environ. Microbiol. 62, 1863-1872 (1996).

Huettel, M., W. Ziebis and S. Forster: Flow induced uptake of particulate matter in permeable sediments. Limnol. Oceanogr. 41, 309-322 (1996).

Isaaksen, M.F. and B.B. Jørgensen: Adaptation of psychrophilic and psychrotrophic sulfate-reducing bacteria to permanently cold environments. Appl. Environ. Microbiol. 62, 408-414 (1996).

Jørgensen, B.B.: Material flux in the sediment. In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, chapter 6, Eds. B.B. Jørgensen, K. Richardson. American Geophysical Union, 1996, 115-135.

Jørgensen, B.B.: Case study. In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, chapter 7, Eds. B.B. Jørgensen, K. Richardson. American Geophysical Union, 1996, 137-154.

Jørgensen, B.B., and K. Richardson (Eds.): Eutrophication in coastal marine ecosystems, Coastal and estuarine studies. American Geophysical Union, 1966.

Jørgensen, B.B. and K. Richardson: Eutrophication: definition, history and effects. In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, chapter 1, Eds. B.B. Jørgensen, K. Richardson. American Geophysical Union, 1996, 1-19.

Khalili, A., A. J. Basu and M. Huettel: A non-Darcy modell for recirculating flow through a fluid-sediment interface in a cylindrical container. Acta Mechanica, in press (1997).

Khalili, A. and I. S. Shivakumara: Onset of convection in a porous layer with net through-flow and internal heat generation. Physics of Fluids, in press (1997).

Knoll, A.H., R.J. Bambach, D.E. Canfield and J.P. Grotzinger: Comparative Earth history and late Permian mass extinction. Science 273, 452-457 (1996).

Raiswell, R. and D.E. Canfield: The kinetics of reaction between silicate iron and dissolved sulfide in Peru margin sediments. Geochim. Cosmochim. Acta. 60, 2777-2787 (1996).

Reimers C.E., K.C. Ruttenburg, D.E. Canfield, M.B. Christiansen and J.B. Martin: Pore water pH and the earliest diagenesis of the Santa Barbara Basin. - Geochim. Cosmochim. Acta. 60, 4037-4057 (1996).

Schulz, H.N., B.B. Jørgensen, H. Fossing, and N.B. Ramsing: Community structure of filamentous, sheath-building bacteria, Thioploca spp., off the coast of Chile. Appl. Environ. Microbiol. 62, 1855-1862 (1996).

Thamdrup, B., D.E. Canfield, T.G. Ferdelman, R.N. Glud and J.K. Gundersen: A biogeochemical survey of the anoxic basin Golfo Dulce, Costa Rica. Rev. Biol. Tropical 44, 19-33 (1996).

Thamdrup, B. and D.E. Canfield: Pathways of carbon oxidation in continental margin sediments off central Chile. Limnol. Ocenogr. 41, 1629-1650 (1996).

Ziebis, W., S. Forster, M. Huettel and B. B. Jørgensen: Complex burrows of the mud shrimp Callianassa truncata and their geochemical impact in the sea-bed. Nature 382, 619-622 (1996).

Ziebis, W., M. Huettel, S. Forster: The impact of biogenic sediment topography on oxygen fluxes in permeable seabeds. - Mar. Ecol. Prog. Ser. 140, 227-237 (1996).

Björn, L. O. , A. Cunningham., Z. Dubinski, M. Estrada, F.L. Figueroa, F. Garcia-Pichel, D.P. Häder, D. Hanelt, G. Levasseur and K. Lüning: Technical discussion I - underwater light measurement and light absorption by algae. Sci. Mar. 60 (Suppl.1), 293- 297 (1996).

Brune, A. and M. Kühl: pH profiles of the extremely alkaline hindguts of soil-feeding termites (Isoptera: Termitidae) determined with microelectrodes. J. Insect Physiol. 42, 1121-1127 (1996).

Camacho, A., F. Garcia-Pichel, E. Vicente and R.W. Castenholz: Adaptation to sulfide and to the underwater light field in three cyanobacterial isolates from Lake Arcas (Spain). FEMS Microbiol. Ecol. 21, 293-301 (1996).

de Beer, D. and G. Muyzer: Multi species biofilms. Report from the discussion session. Water Sci. Technol. 32, 269-270 (1996).

de Beer, D. and P. Stoodley: Relation between the structure of an aerobic biofilm and transport phenomena. Wat. Sci. Technol. 32, 11-18 (1996).

de Beer, D., P. Stoodley and Z. Lewandowski: Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy. Biotechnol. Bioeng. 53, 151-158 (1997).

de Beer, D., V. O’Flaherty, J. Thaveeshi, P. Lens and W. Verstraete: Distribution of extracellular polysaccharides and flotation of anaerobic sludge. Appl. Microbiol. Biotechnol. 46, 197-201 (1996).

de Beer, D., A. Glud, E. Epping and M. Kühl: A fast responding CO₂ microsensor for profiling sediments, microbial mats, and biofilms. Limnol. Oceanogr., in press (1997).

de Beer, D., A. Schramm, C.M. Santegoeds and M. Kühl: A nitrite microsensor for profiling environmental biofilms. Appl. Environ. Microbiol., in press (1997).

Epping, E. H. G. and B.B. Jørgensen: Light-enhanced oxygen respiration in benthic phototrophic communities. Mar. Ecol. Progr. Ser. 139, 193-203 (1996).

Fukshansky-Kazarinova, N., L. Fukshansky, M. Kühl and B.B. Jørgensen: Theory of equidistant three-dimensional radiance measurements with optical microprobes. Applied Optics 35, 65-73 (1996).

Fukshansky-Kazarinova, N., L. Fukshansky, M. Kühl and B.B. Jørgensen: General theory of three-dimensional radiance measurements with optical microprobes. Applied Optics, in press (1996).

Garcia-Pichel, F.: The absorption of ultraviolet radiation by microalgae: simple optics and photobiological implications. Sci. Mar. 60 (Suppl.1), 73-79 (1996).

Garcia-Pichel, F. and B.M. Bebout: The penetration of ultraviolet radiation into shallow water sediments: high exposure for photosynthetic communities. Mar. Ecol. Progr. Ser. 131, 257-262 (1996).

Garcia-Pichel, F. and J. Belnap: Microenvironments and microscale productivity of cyanobacterial desert crusts. J. Phycol. 32, 774-782 (1996).

Garcia-Pichel, F., L. Prufert-Bebout and G. Muyzer: Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to a cosmopolitan cyanobacterium. Appl. Environ. Microbiol. 62, 3284-3291 (1996).

Glud, R.N, N.B. Ramsing, J.K. Gundersen and I. Klimant: Planar optrodes: A new tool for fine scale measurements of two-dimensional O₂ distribution in benthic communities. Mar. Ecol. Prog. Ser. 140, 217-226 (1996).

Glud, R.N, S. Forster and M. Huettel: Influence of radial pressure gradients on solute exchange in stirred benthic chambers. Mar. Ecol. Prog. Ser. 141, 303-311 (1996).

Hartmann, P., W. Ziegler, G. Holst and D.W. Lübbers: Oxygen flux fluorescence lifetime imaging. Sensors and actuators B, in press (1997).

Hillemyr, A, O. Holby and P. Hall: Determination of biogenic silica in marine sediments - selection of pretreatment method and effect of sample size. Vatten 52, 85-92 (1996).

Holby, O. and L.G. Anderson.: Geochemistry in an area recently uncovered from the Filchner Ice Shelf. Cont. Shelf Res. 16, 1479-1488 (1996).

Holby, O. and S. Evans: The vertical distribution of Chernobyl-derived radionuclides in a Baltic Sea sediment. J. Environ. Radioactivity 33, 129-145 (1996).

Holst, G., R.N. Glud, M. Kühl and I. Klimant: A microoptode array for fine scale measurements of oxygen distribution. Sensors and actuators B, in press (1997).

Jeroschewski, P., C. Steuckart and M. Kühl: An amperometric microsensor for the determination of H₂S in aquatic environments. Anal. Chem. 68, 4351-4357 (1996).

Karsten, U.: Growth and organic osmolytes of geographically different isolates of Microcoleus chthonoplastes (Cyanobacteria) from benthic microbial mats: Response to salinity change. J. Phycol. 32, 501-506 (1996).

Karsten, U., and F. Garcia-Pichel: Carotenoids and mycosporine-like amino acid compounds in members of the genus Microcoleus (Cyanobacteria): a chemosystematic study. Syst. Appl. Microbiol. 19, 285-294 (1996).

Karsten, U. and M. Kühl: Die Mikrobenmatte: das kleinste Ökosystem der Welt. Biologie in unserer Zeit 26, 16-26 (1996).

Karsten, U., I. Klimant and G. Holst: A new in vivo fluorometric technique to measure growth of adhering phototrophic microorganisms. Appl. Environ. Microbiol. 62, 237-243 (1996).

Karsten, U., K. Kück, C. Vogt, and G.O. Kirst: Dimethylsulfoniopropionate production in phototrophic organisms and its physiological function as cryoprotectant. In: Biological and environmental chemistry of DMSP and related sulfonium compounds, Eds. R.P. Kiene, P.T. Visscher, M.D. Keller, G.O. Kirst. Plenum Press, New York, 1996, 143-153.

Klimant, I., G. Holst and M. Kühl: A simple fiber-optic sensor to detect the penetration of microsensors into sediments and other biological materials. Limnol. Oceanogr., in press (1997).

Klimant, I., M. Kühl, R.N. Glud and G. Holst: Optical measurements of oxygen and

temperature in microscale: Strategies and biological application. Sensors and Actuators, in press (1997).

Kohls, O., I. Klimant, G. Holst and M. Kühl: Thionine as an indicator for use as a hydrogen sulfide optode. Proc. SPIE 2836, 311-321 (1996).

Kühl, M., R.N. Glud, H. Ploug and N.B. Ramsing: Microenvironmental control of photosynthesis and photosynthesis-coupled respiration in an epilithic cyanobacterial biofilm. J. Phycol. 32, 799-812 (1996).

Nielsen, L.P.N. and R.N. Glud: Denitrification in a coastal sediment measured in situ by nitrogen isotope pairing technique applied to a benthic flux chamber. Mar. Ecol. Progr. Ser., in press (1997).

Santegoeds, C.M., G. Muyzer and D. de Beer: Successional processes in a bacterial biofilm determined with microsensors and molecular techniques. In Proceeding International Symposium Environmental Biotechnology ‘97, in press (1997).

Schreiber, U., M. Kühl, I. Klimant and H. Reising: Measurement of chlorophyll fluorescence within leaves using a modified PAM fluorometer with a fiber-optic microprobe. Phot. Res. 47, 103-109 (1996).

Dissertation

Ploug, H.: Light and photosynthesis in dense populations of microalgae. Ph.D. Thesis, University of Aarhus, Denmark, 1996.

Diplomarbeit

Rink, S.: Untersuchungen der Photosynthese- und Respirationsraten in der symbiontentragenden planktischen Foraminifere Orbulina universa mit Mikroelektroden. Diplomarbeit, Universität Bremen, 1996.

Harder, J.: Anaerobic methane oxidation by bacteria employing ¹⁴C-methane uncontaminated with ¹⁴C-carbon monoxide. Marine Geol., in press (1997).

Harder, J.: Species-independent maintenance energy and natural population sizes. FEMS Microbiol. Ecol., in press (1997).

Foß, S. and J. Harder: Microbial transformation of a tertiary allylalcohol: regioselective isomerization of linalool to geraniol without nerol formation. FEMS Microbiol. Lett., in press (1997).

Harder, J. and C. Probian: Anaerobic mineralisation of cholesterol by a novel type of denitrifying bacterium. Archives of Microbiology, in press (1997).

Rabus, R. and F. Widdel: Utilization of alkylbenzenes during anaerobic growth of pure cultures of denitrifying bacteria on crude oil. Appl. Environ. Microbiol. 62, 1238-1241 (1996).

Rabus, R., M. Fukui, H. Wilkes and F. Widdel: Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Appl. Environ. Microbiol. 62, 3605-3613 (1996).

Straub, K., M. Benz, B. Schink and F. Widdel: Anaerobic nitrate-dependent oxidation of ferrous iron. Appl. Environ. Microbiol. 62, 1458-1460 (1996).

Dissertation

Ehrenreich, P.: Anaerobes Wachstum neuartiger sulfatreduzierender und nitratreduzierender Bakterien auf n-Alkanen und Erdöl. Dissertation, Universität Bremen. Shaker Verlag, Aachen, 1996.

Diplomarbeit

Zengler, K.: Anaerobe Oxidation von Xylolen, anderen Alkylbenzolen und Erdöl. Diplomarbeit, Universität Göttingen, 1996.

Buchholz-Cleven, B.E.E., B. Rattunde and K.L. Straub: Screening for genetic diversity of isolates of anaerobic Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization. Syst. Appl. Microbiol, in press (1997).

Donner G., K. Schwarz, H.G. Hoppe and G. Muyzer: Profiling the succession of bacterial populations in pelagic chemoclines. Arch. Hydrobiol. Spec. Issues Advanc. Limnol. 48, 7-14 (1996).

Ferris, M.J., G. Muyzer and D.M. Ward: Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62, 340-346 (1996).

Isaksen, M.F. and A. Teske: Desulforhopalus vacuolatus, gen. nov. sp. nov, a moderately psychrophilic sulfate-reducing bacterium with gas vacuoles. Arch. Microbiol. 166, 160-168 (1996).

Jetten, M.S.M., S. Logemann, G. Muyzer, L.A. Robertson, S. de Vries, M.C.M. van Loosdrecht and J.G. Kuenen: Novel principles in the microbial conversion of nitrogen compounds. Antonie van Leeuwenhoek 71, 75-93 (1997).

Krekeler, D., P. Sigalevich, A. Teske, H. Cypionka, and Y. Cohen: Desulfovibrio oxyclini sp. nov., an oxygen-respiring sulfate-reducing bacterium from Cyanobacterial mats of Solar Lake, Sinai. Arch. Microbiol, in press (1997).

Leibovitz, E., M. Lemaire, I. Miras, S. Salamitou, P. Beguin, H. Ohayon, P. Gounon, M. Matuschek, K. Sahm and H. Bahl: Occurence and function of a common domain in S-layer and other extracellular proteins. FEMS Microbiol. Rev., in press (1997).

Matuschek, M., K. Sahm, A. Zibat and H. Bahl: Characterization of genes from Thermoanaerobacterium thermosulfurigenes EM1 that encode two glycosyl hydrolases with conserved S-layer-like domains. Mol. Gen. Genet. 252, 493-496 (1996).

Muyzer, G., S. Hottenträger, A. Teske and C. Wawer: Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Molecular microbial ecology manual 3.4.4., Eds. A.D.L. Akkermans, J.D. van Elsas, F.J. de Bruijn. Kluwer Academic Publishers, Dordrecht, The Netherlands, 1996, 1-23.

Muyzer, G. and K. Smalla: The need for DGGE and TGGE in microbial ecology. Antonie van Leeuwenhoek, in press (1997).

Ramsing, N.B., H. Fossing, T.G. Ferdelman, F. Andersen and B. Thamdrup: Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column. Appl. Environ. Microbiol. 62, 1391-1404 (1996).

Sahm, K., M. Matuschek, H. Müller, W. J. Mitchell and H. Bahl: Molecular analysis of the amy gene locus of Thermoanaerobacterium thermosulfurigenes EM1 encoding starch degrading enzymes and a binding protein-dependent maltose transport system. J. Bacteriol. 178, 1039-1046 (1996).

Schramm, A., L.H. Larsen, N.P. Revsbech, N.B. Ramsing, R. Amann and K.-H. Schleifer: Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes. Appl. Envrinom. Microbiol. 62, 4641-4647 (1996).

Teske, A., P. Sigalevich, Y. Cohen and G. Muyzer: Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures. Appl. Environ. Microbiol. 62, 4210-4215 (1996).

Teske, A., C. Wawer, G. Muyzer and N.B. Ramsing: Distribution of sulfate-reducing bacteria in a stratified Fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 1405-1415 (1996).

Dissertation

Wawer, C.: Molekularbiologische Charakterisierung von sulfatreduzierenden Bakterien in Umweltproben unter den Aspekten Diversität und Aktivität. Dissertation, Universität Bremen (1996).