Direktor: Prof. Dr. Bo Barker Jørgensen

Arnosti, C.; Sagemann, J.; Jørgensen, B. B.; Thamdrup, B.: Temperature dependence of microbial degradation of organic matter in marine sediments: polysaccharide hydrolysis, oxygen consumption, and sulfate reduction. Marine Ecology Progress Series 165, 59–70 (1998).

Boehme, S. E.; Sabine, C. L.; Reimers, C. E.: CO₂ fluxes from a coastal transect: a time series approach. Marine Chemistry 63, 49–67 (1998).

Böttcher, M. E.: Isotope fractionation (S, O) during the microbial sulfate reduction in marine sediments: A comparison of nature and experiment (in German). Erlanger geol. Abh., Sonderband 2, 11–12 (1998).

Böttcher, M. E.: Manganese (II) partitioning during experimental precipitation of rhodochrosite-calcite solid-solutions from aqueous solutions. Marine Chemistry 62, 287–297 (1998).

Böttcher, M. E.: Manganese (II) partitioning during formation of rhodochrosite-calcite solid-solutions in suboxic aqueous solutions. Mineralogical Magazine 62 A, 203–204 (1998).

Böttcher, M. E.; Brumsack, H.-J.; de Lange, G. J.: Sulfate reduction and related stable isotope (³⁴S, ¹⁸O) variations in interstitial waters of the eastern Mediterranean. Proceedings of the Ocean Drilling Program, Scientific Results 160, 365–373 (1998).

Böttcher, M. E.; Mart, Y.; Brumsack, H.-J.: Geochemistry of Pliocene and Miocene carbonates from the Eratosthenes Seamount (Site 965). Proceedings of the Ocean Drilling Program, Scientific Results 160, 447–451 (1998).

Böttcher, M. E.; Neretin, L. N.; Lepland, A.; Jørgensen, B. B.: Isotope biogeochemistry of the sulfur cycle in sediments of the Black Sea and the Baltic Sea (in German). Terra Nostra 3, 35–36 (1998).

Böttcher, M. E.; Oelschläger, B.: Sulfur isotope partitioning in permeable tidal sediments under non-steady state conditions. Mineralogical Magazine 62 A, 205–206 (1998).

Böttcher, M. E.; Oelschläger, B.; Höpner, T.; Brumsack, H.-J.; Rullkötter, J.: Sulfate reduction related to the early diagenetic degradation of organic matter and "black spot" formation in tidal sandflats of the German Wadden Sea: Stable isotope (¹³C, ³⁴S, ¹⁸O) and other geochemical results. Organic Geochemistry 29, 1517–1530 (1998).

Böttcher, M. E.; Parafiniuk, J.: Methane-derived carbonates in a native sulfur deposit: stable isotope and trace element descriminations related to the transformation of aragonite to calcite. Isotopes Environmental Health Studies 34, 177–190 (1998).

Böttcher, M. E.; Smock, A. M.; Cypionka, H.: Sulfur isotope fractionation during experimental precipitation of iron (II) and manganese (II) sulfide at room temperature. Chemical Geology 146, 127–134 (1998).

Brüchert, V.: Early diagenesis of sulfur in estuarine sediments: The role of sedimentary humic and fulvic acids. Geochimica et Cosmochimica Acta 62, 1567–1586 (1998).

Canfield, D. E.; Thamdrup, B.; Fleischer, S.: Isotope fractionation and sulfur metabolism by pure and enrichment cultures of elemental sulfur disproportionating bacteria. Limnology and Oceanography 43, 253–264 (1998).

Cypionka, H.; Smock, A. M.; Böttcher, M. E.: A combined pathway of sulfur compound disproportionation in Desulfovibrio desulfuricans. FEMS Microbiology Letters 166, 181–186 (1998).

Finster, K.; Liesack, W.; Thamdrup, B.: Elemental sulfur and thiosulfate dispropotionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment. Applied and Environmental Microbiology 64, 119–125 (1998).

Greeff, O.; Glud, R. N.; Holby, O.; Gundersen, J. K.; Jørgensen, B. B.: A benthic lander for tracer studies in the sea bed: In situ measurements of sulfate reduction. Continental Shelf Research 18, 1581–1594 (1998).

Huettel, M.; Ziebis, W.; Forster, S.; Luther III., G.: Advective transport affecting metal and nutrient distribution and interfacial fluxes in permeable sediments. Geochimica et Cosmochimica Acta 62, 613–631 (1998).

Khalili, A.; Basu, A. J.; Pietrzyk, U.: Flow visualization in porous media via Positron Emission Tomography. Physical Fluids 10, 1031–1033 (1998).

Khalili, A.; Shivakumara, I. S.: Onset of convection in a porous channel with net throughflow and internal heat generation. Physical Fluids 10, 315–319 (1998).

Komada, T.; Reimers, C. L.; Boehme, S. E.: Dissolved inorganic carbon profiles and fluxes determined using pH and PCO2 microelectrodes. Limnology and Oceanography 43, 769–781 (1998).

Neretin, L. N.; Böttcher, M. E.; Volkov, I. I.: The stable sulfur isotopic composition of sulfur species in the Black Sea water column. Mineralogical Magazine 62 A, 1075–1076 (1998).

Passier, H. F.; Böttcher, M. E.; Lange, G. J. de: Stable sulfur isotope partitioning during formation of pyrite and incorporation of sulfur into organic matter in eastern Mediterranean sapropels. Mineralogical Magazine 62 A, 1143–1144 (1998).

Pufahl, P. K.; Maslin, M. A.; Anderson, L.; Brüchert, V.; Jansen, F.; Lin, H.; Perez, M.; Vidal, L.: Lithostratigraphic summary for Leg 175: Angola-Benguela upwelling system, Vol. 175. In: Proc. ODP, Init. Repts., Vol. 175. (Eds.) G. Wefer, W. H. Berger, C. Richter. Ocean Drilling Program, College Station, TX 1998, 533–542.

Rozanov, A. G.; Neretin, L. N.; Volkov, I. I.: Redox nepheloid layer (RNL) of the Black Sea: its location, composition and origin. In: Ecosystem modeling as a management tool for the Black Sea, vol. I. (Eds.) L. J. Ivanov, T. Oguz. Kluwer, Amsterdam 1998, 77–92.

Rusch, A.; Töpken, H.; Böttcher, M. E.; Höpner, T.: Recovery from black spots – results of a loading experiment in the Wadden Sea. Journal of Sea Research 40, 205–219 (1998).

Rysgaard, S.; Thamdrup, B.; Risgaard-Petersen, N.; Fossing, H.; Berg, P.; Christensen, P. B.; Dalsgaard, T.: Seasonal carbon and nutrient mineralization in a high-Arctic coastal marine sediment, Young Sound, Northeast Greenland. Marine Ecology Progress Series 175, 261–276 (1998).

Sagemann, J.; Jørgensen, B. B.; Greeff, O.: Temperature dependence and rates of sulfate reduction in cold sediments of Svalbard, Arctic Ocean. Geomicrobiology Journal 15, 85–100 (1998).

Schubert, C. J.; Villanueva, J.; Calvert, S. E.; Rad, U. von; Schulz, H.; Berner, U.; Erlenkeuser, H.: Stable phytoplankton community structure in the Arabian Sea over the past 200,000 years. Nature 394, 563–566 (1998).

Smock, A. M.; Böttcher, M. E.; Cypionka, H.: Fractionation of sulfur isotopes during thiosulfate reduction by Desulfovibrio desulfuricans. Archives of Microbiology 169, 460–463 (1998).

Smock, A. M.; Böttcher, M. E.; Cypionka, H.: A combined pathway of sulfur compound disproportionation by a sulfate-reducing bacterium (Desulfovibrio desulfuricans): Evidence from stable sulfur isotopes. Mineralogical Magazine 62 A, 1423–1424 (1998).

Teske, A.; Ramsing, N. B.; Habicht, K.; Fukui, M.; Kuever, J.; Jørgensen, B. B.; Cohen, Y.: Sulfate-reducing bacteria in oxic cyanobacterial mats of Solar Lake (Sinai, Egypt). Applied and Environmental Microbiology 64, 2943–2951 (1998).

Thamdrup, B.; Fleischer, S.: Temperature dependence of oxygen respiration, nitrogen mineralization, and nitrification in Arctic sediments. Aquatic Microbial Ecology 15, 191–199 (1998).

Thamdrup, B.; Hansen, J. W.; Jørgensen, B. B.: Temperature dependence of aerobic respiration in a coastal sediment. FEMS Microbiology Ecology 25, 189–200 (1998).

Beitrag in Sammelwerk

Vidal, L.; Brüchert, V.: Regional and stratigraphic variation in color reflectance of sediments from Leg 175. In: Proc. ODP, Init. Repts., Vol. 175. (Eds.) G. Wefer, W. H. Berger, C. Richter. Ocean Drilling Program, College Station, TX 1998, 569–577.

Diplom-, Magister-, Staatsexamensarbeiten

Hoffman, F.: Die Bedeutung schwefeldisproportionierender Bakterien für den Schwefelkreislauf in marinen Sedimenten. Göttingen 1998.

Kaiser, J.: Schwefel-Isotopenaustausch und Disproportionierung bei Thiosulfat in chemischen und mikrobiellen Systemen. Bremen 1998.

Direktor: Prof. Dr. Friedrich Widdel

Aeckersberg, F.; Rainey, F. A.; Widdel, F.: Growth, natural relationships, cellular fatty acids and metabolic adaptation of sulfate-reducing bacteria that utilize long-chain alkanes under anoxic conditions. Archives of Microbiology 170, 361–369 (1998).

Foß, S.; Harder, J.: Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen containing monoterpenes (linalool, menthol, and eucalyptol) and nitrate. Systematic and Applied Microbiology 21, 365–373 (1998).

Foß, S.; Heyen, U.; Harder, J.: Alcaligenes defragrans sp. nov., description of four strains isolated on alkenoic monoterpenes ((+)-menthene, a-pinene, 2-carene, and a-phellandrene) and nitrate. Systematic and Applied Microbiology 21, 237–244 (1998).

Heyen, U.; Harder, J.: Cometabolic isoterpinolene formation from isolimonene by denitrifying Alcaligenes defragrans. FEMS Microbiology Letters 169, 67–71 (1998).

Straub, K. L.; Buchholz-Cleven, B. E. E.: Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments. Applied and Environmental Microbiology 64, 4846–4856 (1998).

Straub, K. L.; Hanzlik, M.; Buchholz-Cleven, B. E. E.: The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria. Systematic and Applied Microbiology 21, 442–449 (1998).

Habilitation

Harder, J.: Anaerobe Oxidation von isoprenoiden Naturstoffen und Methan durch Bakterien. Bremen 1998.

Dissertationen

Foß, S.: Mikrobieller Abbau isopernoider Naturstoffe: Anaerobe Oxidation von Monoterpenen durch nitratreduzierende Bakterien. Bremen 1998.

Harms, G.: Anaerober Abbau von p-Cymen und anderen Dialkylbenzenen durch neu isolierte Bakterienarten. Bremen 1998.

Ioannidis, I.: Reinigung und Charakterisierung der 1,2-Cyclohexandion umsetzenden Enzymaktivität aus Azoarcus sp. Stamm 22Lin. Bremen 1998.

Diplom-, Magister-, Staatsexamensarbeiten

Kniemeyer, O.: Anaerober Abbau von Cholesterin durch das denitrifizierende Bakterium 72Chol. Bremen 1998.

Leiter Priv.-Doz. Dr. Rudolf I. Amann

Amann, R.; Kühl, M.: In situ methods for assessment of microorganisms and their activities. Current Opinion in Microbiology 1, 352–358 (1998).

Amann, R.; Lemmer, H.; Wagner, M.: Monitoring the community structure of wastewater treatment plants: A comparison of old and new techniques. FEMS Microbiology Ecology 25, 205–215 (1998).

Brinkhoff, T.; Santegoeds, C. M.; Sahm, K.; Kuever, J.; Muyzer, G.: A polyphasic approach to study the diversity and vertical distribution of sulfur-oxidizing Thiomicrospira species in coastal sediments of the German Wadden Sea. Applied and Environmental Microbiology 64, 4650–4657 (1998).

Chatzinotas, A.; Sandaa, R. A.; Schönhuber, W.; Amann, R.; Daae, F. L.; Torsvik, J.; Zeyer, J.; Hahn, D.: Analysis of broad-scale differences in microbial community composition of two pristine forest soils. Systematic and Applied Microbiology 21, 579–587 (1998).

Dubilier, N.; Windoffer, R.; Giere, O.: Ultrastructure and stable carbon isotope composition of the hydrothermal vent mussels bathymodiolus brevior and B. Sp. affinis brevior from the north Fiji basin, Western Pacific. Marine Ecology Progress Series 165, 187–193 (1998).

Fuchs, B M.; Wallner, G.; Beisker, W.; Schwippl, I.; Ludwig, W.; Amann, R.: Flow Cytometric Analysis of the In-Situ Accessibility of Escherichia coli 16 S rRNA for Fluorescently Labeled Oligonucleotide Probes. Applied and Environmental Microbiology 64, 4973–4982 (1998).

Garcia-Pichel, F.; Nuebel, U.; Muyzer, G.: The phylogeny of unicellular, extremely halotolerant cyanobacteria. Archives of Microbiology 169, 469–482 (1998).

Glöckner, F. O.; Babenzien, H.-D.; Amann, R.: Phylogeny and identification in situ of Nevskia ramosa. Applied and Environmental Microbiology 64, 1895–1901 (1998).

Llobet-Brossa, E.; Rossellò-Mora, R.; Amann, R.: Microbial community composition of Wadden Sea sediments as revealed by Fluorescence-in-situ-Hybridization. Applied and Environmental Microbiology 64, 2691–2696 (1998).

Muyzer, G.: Structure, function and dynamics of microbial communities. The molecular biological approach. In: Advances in Molecular Ecology. (Ed.) G. R. Carvalho. IOS Press, Amsterdam, NATO Science Series A 306, 87–117 (1998).

Muyzer, G.; Smalla, K.: Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73, 127–141 (1998).

Neef, A.; Amann, R.; Schlesner, H.; Schleifer, K.-H.: Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology 144, 3257–3266 (1998).

Pernthaler, J.; Glöckner, F. O.; Unterholzner, S.; Alfreider, A.; Psenner, R.; Amann, R.: Seasonal community and population dynamics of pelagic Bacteria and Archaea in a high mountain lake. Applied and Environmental Microbiology 64, 4299–4306 (1998).

Sahm, K.; Berninger, U.-G.: Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments (Svalbard, Arctic Ocean). Marine Ecology Progress Series 165, 71–80 (1998).

Santegoeds, C. M.; Ferdelman, T G.; Muyzer, G.; Beer, D. de: Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms. Applied and Environmental Microbiology 64, 3731–3739 (1998).

Santegoeds, C. M.; Muyzer, G.; Beer, D. de: Biofilm dynamics studied with microsensors and molecular techniques. Water Science and Technology 37, 125–129 (1998).

Schramm, A.; Amann, R.: In situ structure and function analysis of biofilms. In: Technik anaerober Prozesse. (Eds.) H. Märkl, R. Stegmann. DECHEMA, Frankfurt/M. 1998, 45–54.

Schramm, A.; De Beer, D.; Heuvel, H. van den; Ottengraf, S.; Amann, R.: In situ structure/Function studies in wastewater treatment systems. Water Science and Technology 37, 413–416 (1998).

Schramm, A.; De Beer, D.; Wagner, M.; Amann, R.: Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor. Applied and Environmental Microbiology 64, 3480–3485 (1998).

Sorokin, D. Y.; Muyzer, G.; Brinkhoff, T.; Kuenen, J. G.; Jetten, M. S. M.: Isolation and characterization of a novel facultatively alkaliphilic nitrobacter species, N. alkalicus sp. nov. Archives of Microbiology 170, 345–352 (1998).

Spring, S.; Lins, U.; Amann, R.; Schleifer, K.-H.; Ferreira, L. C. S.; Esquivel, D. M. S.; Farina, M.: Phylogenetic affiliation and ultrastructure of uncultured magnetic bacterian with unusual large magnetosoms. Archives of Microbiology 169, 136–147 (1998)

Stoffels, M.; Amann, R.; Ludwig, W.; Hekmat, D.; Schleifer, K.-H.: Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. Applied and Environmental Microbiology 64, 930–939 (1998).

Wichels, A.; Biel, S. S.; Gelderblom, H. R.; Brinkhoff, T.; Muyzer, G.; Schütt, C.: Bacteriophage diversity in the North Sea. Applied and Environmental Microbiology 64, 4128–4133 (1998).

Wirsen, C. O.; Brinkhoff, T.; Kuever, J.; Muyzer, G.; Molyneaux, S.; Jannasch, H. W.: Comparison of a New Thiomicrospira Strain From the Mid-Atlantic Ridge With Known Hydrothermal Vent Isolates. Applied and Environmental Microbiology 64, 4057–4059 (1998).

Zwart, G.; Huismans, R.; Agterveld, M. van; Peer, Y. van de; Rijk, P. de; Eenhorn, H.; Muyzer, G.; Hannen, E. van; Gons, H.; Laanbroek, R.: Divergent members of the bacterial division Verrucomicrobiales in a termperate freshwater lake. FEMS Microbiology Ecology 25, 159–169 (1998).

Beitrag in Sammelwerk

Wagner, M.; Hutzler, P.; Amann, R.: Three dimensional analysis of complex microbial communities by combining confocal laser scanning microscopy and fluorescence in situ hybridisation. In: Digital image analysis of microbes: imaging, morphometry fluometry and motility techniques and applications. (Eds.) M. H. F. Wilkinson, F. Schut. John Wiley and Sons Ltd., Chichester/UK 1998, 467–486.

Dissertationen

Brinkhoff, T.: Investigation of the ecological relevance of sulfur-oxidizing bacteria of the genus Thiomicrospira in marine habitats with molecular biological and microbiological techniques. Bremen 1998.

Fuchs, B M.: Entwicklung von durchflußzytometischen Methoden zur Analyse der Diversität und Struktur mikrobieller Lebensgemeinschaften des Wassers. München 1998.

Glöckner, F. O.: Phylogenie und in situ Identifizierung von Prokaryonten in limnischen und marinen Ökosystemen. München 1998.

Schönhuber, W.: Entwicklung und Anwendung von in situ-Hybridisierungsmethoden für Cyanobakterien. München 1998.

Schramm, A.: In Situ Structure and Function Analysis of Nitrifying/Denitrifying Biofilms. Bremen 1998.

Diplom-, Magister-, Staatsexamensarbeiten

Schäfer, H.: Sukzessive Veränderungen der Diversität mariner, mikrobieller Populationen, bestimmt durch 16 S rDNA Klonbibliotheken und denaturierende Gradienten Gelelektrophorese (DGGE). Bremen 1998.